##gff-version 3
#species: Drosophila erecta
#assembly-id: CAF1
#annotation-group: MAKA (see Mount, Gotea, Lin, Hernandez and Makalowski. 2007. "Spliceosomal small nuclear RNA genes in 11 insect genomes." RNA 13:5-14.)
#algorithm: SPR (SPliceosomal RNA; BLASTN 2.2.10 + MFOLD 3.1.2 + manual)
#authors: smount@umd.edu, vgotea@psu.edu, cxl46@psu.edu, wojtek@psu.edu
dere_scaffold_4770	blastn+mfold+man	snRNA	1069392	1069555	.	+	.	ID=Dere\GG_MAKA_SPR_26000029;Name=snRNA:U1:1
dere_scaffold_4770	blastn+mfold+man	snRNA	1070987	1071150	.	-	.	ID=Dere\GG_MAKA_SPR_26000030;Name=snRNA:U1:2
dere_scaffold_4820	blastn+mfold+man	snRNA	1272655	1272818	.	+	.	ID=Dere\GG_MAKA_SPR_26000031;Name=snRNA:U1:3
dere_scaffold_4820	blastn+mfold+man	snRNA	8374931	8375094	.	+	.	ID=Dere\GG_MAKA_SPR_26000032;Name=snRNA:U1:4
dere_scaffold_4820	blastn+mfold+man	snRNA	8390070	8390233	.	-	.	ID=Dere\GG_MAKA_SPR_26000033;Name=snRNA:U1:5
dere_scaffold_4820	blastn+mfold+man	snRNA	8391583	8391746	.	-	.	ID=Dere\GG_MAKA_SPR_26000034;Name=snRNA:U1:6
dere_scaffold_4929	blastn+mfold+man	snRNA	959629	959792	.	+	.	ID=Dere\GG_MAKA_SPR_26000035;Name=snRNA:U1:7
dere_scaffold_4929	blastn+mfold+man	snRNA	963537	963700	.	-	.	ID=Dere\GG_MAKA_SPR_26000036;Name=snRNA:U1:8
dere_scaffold_4784	blastn+mfold+man	snRNA	6591779	6592052	.	-	.	ID=Dere\GG_MAKA_SPR_26000037;Name=snRNA:U11:1
dere_scaffold_4784	blastn+mfold+man	snRNA	17181332	17181563	.	-	.	ID=Dere\GG_MAKA_SPR_26000038;Name=snRNA:U12:1
dere_scaffold_1444	blastn+mfold+man	snRNA	530	721	.	-	.	ID=Dere\GG_MAKA_SPR_26000039;Name=snRNA:U2:1
dere_scaffold_1444	blastn+mfold+man	snRNA	3107	3298	.	-	.	ID=Dere\GG_MAKA_SPR_26000040;Name=snRNA:U2:2
dere_scaffold_4845	blastn+mfold+man	snRNA	4506534	4506725	.	-	.	ID=Dere\GG_MAKA_SPR_26000041;Name=snRNA:U2:3
dere_scaffold_4845	blastn+mfold+man	snRNA	4509328	4509519	.	-	.	ID=Dere\GG_MAKA_SPR_26000042;Name=snRNA:U2:4
dere_scaffold_4845	blastn+mfold+man	snRNA	4512123	4512314	.	-	.	ID=Dere\GG_MAKA_SPR_26000043;Name=snRNA:U2:5
dere_scaffold_4845	blastn+mfold+man	snRNA	4563489	4563680	.	+	.	ID=Dere\GG_MAKA_SPR_26000044;Name=snRNA:U2:6
dere_scaffold_4929	blastn+mfold+man	snRNA	12196985	12197176	.	+	.	ID=Dere\GG_MAKA_SPR_26000045;Name=snRNA:U2:7
dere_scaffold_4929	blastn+mfold+man	snRNA	12223161	12223352	.	-	.	ID=Dere\GG_MAKA_SPR_26000046;Name=snRNA:U2:8
dere_scaffold_4929	blastn+mfold+man	snRNA	12227222	12227413	.	+	.	ID=Dere\GG_MAKA_SPR_26000047;Name=snRNA:U2:9
dere_scaffold_4845	blastn+mfold+man	snRNA	3285398	3285540	.	+	.	ID=Dere\GG_MAKA_SPR_26000048;Name=snRNA:U4:1
dere_scaffold_4845	blastn+mfold+man	snRNA	4513880	4514021	.	-	.	ID=Dere\GG_MAKA_SPR_26000049;Name=snRNA:U4:2
dere_scaffold_4929	blastn+mfold+man	snRNA	5652266	5652412	.	+	.	ID=Dere\GG_MAKA_SPR_26000050;Name=snRNA:U4:3
dere_scaffold_4770	blastn+mfold+man	snRNA	1296081	1296240	.	-	.	ID=Dere\GG_MAKA_SPR_26000051;Name=snRNA:U4atac:1
dere_scaffold_1444	blastn+mfold+man	snRNA	1331	1458	.	+	.	ID=Dere\GG_MAKA_SPR_26000052;Name=snRNA:U5:1
dere_scaffold_1444	blastn+mfold+man	snRNA	3908	4035	.	+	.	ID=Dere\GG_MAKA_SPR_26000053;Name=snRNA:U5:2
dere_scaffold_4784	blastn+mfold+man	snRNA	3098922	3099044	.	+	.	ID=Dere\GG_MAKA_SPR_26000054;Name=snRNA:U5:3
dere_scaffold_4845	blastn+mfold+man	snRNA	4507333	4507460	.	+	.	ID=Dere\GG_MAKA_SPR_26000055;Name=snRNA:U5:4
dere_scaffold_4845	blastn+mfold+man	snRNA	4510129	4510256	.	+	.	ID=Dere\GG_MAKA_SPR_26000056;Name=snRNA:U5:5
dere_scaffold_4929	blastn+mfold+man	snRNA	3096179	3096308	.	+	.	ID=Dere\GG_MAKA_SPR_26000057;Name=snRNA:U5:6
dere_scaffold_4929	blastn+mfold+man	snRNA	3096703	3096832	.	+	.	ID=Dere\GG_MAKA_SPR_26000058;Name=snRNA:U5:7
dere_scaffold_950	blastn+mfold+man	snRNA	1	47	.	-	.	ID=Dere\GG_MAKA_SPR_26000059;Name=snRNA:U6:1;Note=the 3' end is missing from the assembly (the gene is located at the beginning) 
dere_scaffold_1153	blastn+mfold+man	snRNA	36	142	.	-	.	ID=Dere\GG_MAKA_SPR_26000060;Name=snRNA:U6:2
dere_scaffold_1153	blastn+mfold+man	snRNA	516	622	.	-	.	ID=Dere\GG_MAKA_SPR_26000061;Name=snRNA:U6:3
dere_scaffold_1154	blastn+mfold+man	snRNA	174	280	.	+	.	ID=Dere\GG_MAKA_SPR_26000062;Name=snRNA:U6:4;Note=the promoter is missing from the assembly (this gene is located at the beginning)
dere_scaffold_1154	blastn+mfold+man	snRNA	654	760	.	+	.	ID=Dere\GG_MAKA_SPR_26000063;Name=snRNA:U6:5
dere_scaffold_4820	blastn+mfold+man	snRNA	7674415	7674521	.	-	.	ID=Dere\GG_MAKA_SPR_26000064;Name=snRNA:U6:6
dere_scaffold_4820	blastn+mfold+man	snRNA	7674933	7675039	.	-	.	ID=Dere\GG_MAKA_SPR_26000065;Name=snRNA:U6:7
dere_scaffold_4929	blastn+mfold+man	snRNA	17299189	17299286	.	+	.	ID=Dere\GG_MAKA_SPR_26000066;Name=snRNA:U6atac:1