##gff-version 3
#species: Drosophila ananassae
#assembly-id: CAF1
#annotation-group: MAKA (see Mount, Gotea, Lin, Hernandez and Makalowski. 2007. "Spliceosomal small nuclear RNA genes in 11 insect genomes." RNA 13:5-14.)
#algorithm: SPR (SPliceosomal RNA; BLASTN 2.2.10 + MFOLD 3.1.2 + manual)
#authors: smount@umd.edu, vgotea@psu.edu, cxl46@psu.edu, wojtek@psu.edu
dana_scaffold_12911	blastn+mfold+man	snRNA	4237103	4237266	.	+	.	ID=Dana\GF_MAKA_SPR_26000000;Name=snRNA:U1:1
dana_scaffold_13340	blastn+mfold+man	snRNA	17423349	17423512	.	-	.	ID=Dana\GF_MAKA_SPR_26000001;Name=snRNA:U1:2
dana_scaffold_13340	blastn+mfold+man	snRNA	19857849	19858012	.	+	.	ID=Dana\GF_MAKA_SPR_26000002;Name=snRNA:U1:3
dana_scaffold_13340	blastn+mfold+man	snRNA	19873600	19873763	.	-	.	ID=Dana\GF_MAKA_SPR_26000003;Name=snRNA:U1:4
dana_scaffold_13340	blastn+mfold+man	snRNA	19875415	19875578	.	-	.	ID=Dana\GF_MAKA_SPR_26000004;Name=snRNA:U1:5
dana_scaffold_13340	blastn+mfold+man	snRNA	19877040	19877203	.	-	.	ID=Dana\GF_MAKA_SPR_26000005;Name=snRNA:U1:6
dana_scaffold_13340	blastn+mfold+man	snRNA	22980454	22980617	.	+	.	ID=Dana\GF_MAKA_SPR_26000006;Name=snRNA:U1:7
dana_scaffold_13340	blastn+mfold+man	snRNA	22986242	22986405	.	+	.	ID=Dana\GF_MAKA_SPR_26000007;Name=snRNA:U1:8
dana_scaffold_13340	blastn+mfold+man	snRNA	22991033	22991196	.	-	.	ID=Dana\GF_MAKA_SPR_26000008;Name=snRNA:U1:9
dana_scaffold_12911	blastn+mfold+man	snRNA	1430500	1430761	.	-	.	ID=Dana\GF_MAKA_SPR_26000009;Name=snRNA:U11:1;Note=likely a pseudogene (missing the promoter)
dana_scaffold_13337	blastn+mfold+man	snRNA	9545048	9545267	.	+	.	ID=Dana\GF_MAKA_SPR_26000010;Name=snRNA:U11:2
dana_scaffold_13337	blastn+mfold+man	snRNA	13948116	13948373	.	-	.	ID=Dana\GF_MAKA_SPR_26000011;Name=snRNA:U12:1
dana_scaffold_12916	blastn+mfold+man	snRNA	9047157	9047346	.	+	.	ID=Dana\GF_MAKA_SPR_26000012;Name=snRNA:U2:1
dana_scaffold_12943	blastn+mfold+man	snRNA	1887869	1888060	.	-	.	ID=Dana\GF_MAKA_SPR_26000013;Name=snRNA:U2:2
dana_scaffold_13340	blastn+mfold+man	snRNA	17424071	17424262	.	-	.	ID=Dana\GF_MAKA_SPR_26000014;Name=snRNA:U2:3
dana_scaffold_13340	blastn+mfold+man	snRNA	19874468	19874659	.	-	.	ID=Dana\GF_MAKA_SPR_26000015;Name=snRNA:U2:4
dana_scaffold_13340	blastn+mfold+man	snRNA	22981945	22982136	.	-	.	ID=Dana\GF_MAKA_SPR_26000016;Name=snRNA:U2:5
dana_scaffold_13340	blastn+mfold+man	snRNA	22987633	22987824	.	+	.	ID=Dana\GF_MAKA_SPR_26000017;Name=snRNA:U2:6
dana_scaffold_13340	blastn+mfold+man	snRNA	22989613	22989804	.	-	.	ID=Dana\GF_MAKA_SPR_26000018;Name=snRNA:U2:7
dana_scaffold_12916	blastn+mfold+man	snRNA	8998621	8998762	.	-	.	ID=Dana\GF_MAKA_SPR_26000019;Name=snRNA:U4:1
dana_scaffold_12916	blastn+mfold+man	snRNA	10992073	10992215	.	+	.	ID=Dana\GF_MAKA_SPR_26000020;Name=snRNA:U4:2
dana_scaffold_13340	blastn+mfold+man	snRNA	23215513	23215673	.	-	.	ID=Dana\GF_MAKA_SPR_26000021;Name=snRNA:U4atac:1
dana_scaffold_12916	blastn+mfold+man	snRNA	8997353	8997477	.	+	.	ID=Dana\GF_MAKA_SPR_26000022;Name=snRNA:U5:1
dana_scaffold_12916	blastn+mfold+man	snRNA	9606909	9607037	.	-	.	ID=Dana\GF_MAKA_SPR_26000023;Name=snRNA:U5:2
dana_scaffold_12943	blastn+mfold+man	snRNA	1889101	1889228	.	+	.	ID=Dana\GF_MAKA_SPR_26000024;Name=snRNA:U5:3
dana_scaffold_13337	blastn+mfold+man	snRNA	9027585	9027708	.	-	.	ID=Dana\GF_MAKA_SPR_26000025;Name=snRNA:U5:4
dana_scaffold_13088	blastn+mfold+man	snRNA	426907	427013	.	+	.	ID=Dana\GF_MAKA_SPR_26000026;Name=snRNA:U6:1
dana_scaffold_13088	blastn+mfold+man	snRNA	427698	427804	.	+	.	ID=Dana\GF_MAKA_SPR_26000027;Name=snRNA:U6:2
dana_scaffold_12916	blastn+mfold+man	snRNA	5473530	5473627	.	+	.	ID=Dana\GF_MAKA_SPR_26000028;Name=snRNA:U6atac:1